MmuEX6002796 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4470171-4470879:+
Coord C1 exon
chr6:4470171-4470269
Coord A exon
chr6:4470596-4470649
Coord C2 exon
chr6:4470772-4470879
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGTTTCCTTTGGATCTTAGGGT
3' ss Score
8.9
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGACTCCCTGGTGTCGCTGGGGCTCCCGGTCTCCCTGGCCCCCGTGGTATTCCTGGCCCCGCTGGTGCTGCTGGTGCTACAGGTGCCAGAGGACTTGTT
Seq A exon
GGTGAGCCTGGTCCTGCTGGCTCCAAAGGAGAATCCGGTAACAAGGGTGAGCCT
Seq C2 exon
GGCTCTGTTGGAGCCCAAGGTCCTCCTGGTCCCAGCGGTGAAGAAGGAAAGAGAGGGTCTCCCGGAGAAGCTGGATCTGCTGGCCCTGCAGGGCCTCCAGGGCTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'24-26,'24-24,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.1=39.4),PF0139113=Collagen=FE(32.3=100)
A:
PF0139113=Collagen=FE(17.2=100),PF0139113=Collagen=PU(15.3=61.1)
C2:
PF0139113=Collagen=PD(29.3=80.6),PF0139113=Collagen=FE(48.6=100),PF0139113=Collagen=PU(8.3=19.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCCTGGTGTCGCTGG
R:
CTTTCCTTCTTCACCGCTGGG
Band lengths:
148-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: