GgaEX0028377 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23547680-23552520:+
Coord C1 exon
chr2:23547680-23547778
Coord A exon
chr2:23548302-23548355
Coord C2 exon
chr2:23552467-23552520
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTTTTTATGTTGGACTCTAGGGT
3' ss Score
8.09
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTCTTCCTGGTGTTGCTGGTGCTCCTGGTCTGCCTGGGCCCCGTGGTATTCCTGGTCCTCCTGGCCCTGCTGGTCCAAGTGGTGCTAGGGGACTTGTT
Seq A exon
GGTGAACCAGGCCCTGCTGGTGCCAAGGGAGAAAGTGGTAACAAGGGTGAGCCT
Seq C2 exon
GGTGCTCCTGGTCCTGAGGGAAACAACGGTGCTCAAGGTCCTCCTGGTGTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX1-19/48=18-26
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(15.7=39.4)
A:
PF0139113=Collagen=FE(19.8=100),PF0139113=Collagen=PU(14.9=72.2)
C2:
PF0139113=Collagen=PD(11.6=44.4),PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCTGGTGTTGCTGGTG
R:
TTGAGCACCGTTGTTTCCCTC
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]