MmuEX6002802 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4468474-4468992:+
Coord C1 exon
chr6:4468474-4468518
Coord A exon
chr6:4468791-4468844
Coord C2 exon
chr6:4468948-4468992
Length
54 bp
Sequences
Splice sites
3' ss Seq
AACAATATTTCTGCTTCTAGGGA
3' ss Score
8.04
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGAACCCGGTGCCCCTGGAGAGAATGGAACTCCAGGTCAAGCA
Seq A exon
GGAGCCCGAGGGCTTCCTGGTGAGAGAGGGCGTGTCGGAGCTCCTGGTCCAGCT
Seq C2 exon
GGTGCCCGAGGCAGTGATGGAAGCGTTGGCCCCGTCGGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(16.4=80.0),PF0139113=Collagen=FE(17.3=100)
A:
PF0139113=Collagen=FE(21.0=100)
C2:
PF0139113=Collagen=FE(17.3=100),PF0139113=Collagen=PU(5.8=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCCTGGAGAGAATGGAA
R:
GGGGCCAACGCTTCCATC
Band lengths:
68-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: