MmuEX6002802 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4518474-4518992:+
Coord C1 exon
chr6:4518474-4518518
Coord A exon
chr6:4518791-4518841
Coord C2 exon
chr6:4518948-4518992
Length
51 bp
Sequences
Splice sites
3' ss Seq
AACAATATTTCTGCTTCTAGGGA
3' ss Score
8.04
5' ss Seq
CCAGCTGTA
5' ss Score
-27.5
Exon sequences
Seq C1 exon
GGTGAACCCGGTGCCCCTGGAGAGAATGGAACTCCAGGTCAAGCA
Seq A exon
GGAGCCCGAGGGCTTCCTGGTGAGAGAGGGCGTGTCGGAGCTCCTGGTCCA
Seq C2 exon
GGTGCCCGAGGCAGTGATGGAAGCGTTGGCCCCGTCGGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'28-26,'28-25,29-26
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCCTGGAGAGAATGGAA
R:
GGGGCCAACGCTTCCATC
Band lengths:
68-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types