MmuEX6003374 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29491665-29496975:-
Coord C1 exon
chr6:29496802-29496975
Coord A exon
chr6:29496620-29496702
Coord C2 exon
chr6:29491665-29491758
Length
83 bp
Sequences
Splice sites
3' ss Seq
ATAGCTGCCCCCATCTTCAGGCT
3' ss Score
7.01
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACTGCATCTTGGAGGCACAGGTGTTTGTAGATGGGGAGCGCTTCCCTCATCCAAGAGACCCCTGCCAGGAGTGCTGGTGTCAGGAAGGCCAAGCTCACTGCCAGCTCCGTGCCTGCCCCAGCGCCCCCTGTGTTCACCCTCTGCCAGGCACCTGCTGCAAGAATGACTGCACAG
Seq A exon
GCTGTGCCTTTGGCGGGAAAGAGTACCCCAATGGAGCGGACTTCCCACATCCCACTGATCCGTGTCGCCTGTGTCGCTGTCTG
Seq C2 exon
GCCGGCCAGGTCAGCTGCACGAGGCTTCAGTGCCCGTCCCTGCCCTGCTTGCACCAGGTCACAGAACCAGGGACCTGCTGTCCTCGATGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022_MULTIEX1-11/30=10-19
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=WD(100=94.9)
A:
PF0009313=VWC=PU(45.6=92.9)
C2:
PF0009313=VWC=PD(50.9=90.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTGCTGGTGTCAGGAAG
R:
GGTTCTGTGACCTGGTGCAAG
Band lengths:
176-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types