RnoEX0046268 @ rn6
Exon Skipping
Gene
ENSRNOG00000021855 | Kcp
Description
kielin/chordin-like protein [Source:RGD Symbol;Acc:1561119]
Coordinates
chr4:56774896-56775458:-
Coord C1 exon
chr4:56775285-56775458
Coord A exon
chr4:56775104-56775186
Coord C2 exon
chr4:56774896-56774989
Length
83 bp
Sequences
Splice sites
3' ss Seq
CATAGCTGCCCCCTCTTCAGGCT
3' ss Score
5.99
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACTGCATCCTGGAGGCACAGATGTTTGTAGATGGGGAGCGCTTTCCTCATCCAAGAGACCCCTGCCAGGAGTGCCTGTGTCAGGAAGGCCAGACTCACTGCCAGCTCCGAGCCTGCCACAGCGCCCCCTGTGGTCACCCTCTGCCAAGCACCTGCTGCAGGAATGACTGCAAAG
Seq A exon
GCTGTGCCTTTGGCGGGAAAGAGTACCTCAACGGAGCAGACTTCCCGCATCCCACTGATCCGTGTCGCATGTGTCGCTGTCTG
Seq C2 exon
AGCGGCAATGTACAATGCCTGGCGCGTCGCTGTCCGCCACTGGCCTGTCCGCAGCCAGTCCTCACTCCGGGAGACTGCTGCCCTCAGTGCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021855-'22-24,'22-23,23-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=PU(45.6=92.9)
C2:
PF0009313=VWC=PD(50.9=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTTGTAGATGGGGAGCGC
R:
CGCCAGGCATTGTACATTGC
Band lengths:
178-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]