MmuEX6003390 @ mm10
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29477059-29478165:-
Coord C1 exon
chr6:29478107-29478165
Coord A exon
chr6:29477871-29478026
Coord C2 exon
chr6:29477059-29477126
Length
156 bp
Sequences
Splice sites
3' ss Seq
CATTTCCCACCCATCTGCAGCTT
3' ss Score
8.12
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCTGGAGCTACCTATGACACTGCTGGAGATGGAGGGGAGCCAGCGGGCACAGGAGAAG
Seq A exon
CTTCTCTGGGACTTGGAGCTGCTGACTGGGGTAGGGCTGGGCCTCTTCTGGCCCCCCTGGGCCGGGTACTGCAGCCAGAGGAGCCAGACTCAGTATGCACAGAGCCAGTGCAGCCAGTCCTGGGGCAGGAGTGTAGATGAAGACTTTGAGCAGCTG
Seq C2 exon
AGTTCCAAGCTGTGTCCTCCACCCCAGGCTGGGGAAGCCCACAGTGAGAGCCACCAGCTCCTGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'57-79,'57-78,58-79=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGAGCTACCTATGACAC
R:
CCCTTCAGGAGCTGGTGGC
Band lengths:
127-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types