MmuEX6003390 @ mm9
Exon Skipping
Gene
ENSMUSG00000059022 | Kcp
Description
kielin/chordin-like protein [Source:MGI Symbol;Acc:MGI:2141640]
Coordinates
chr6:29427059-29428165:-
Coord C1 exon
chr6:29428107-29428165
Coord A exon
chr6:29427871-29428026
Coord C2 exon
chr6:29427059-29427126
Length
156 bp
Sequences
Splice sites
3' ss Seq
CATTTCCCACCCATCTGCAGCTT
3' ss Score
8.12
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCTGGAGCTACCTATGACACTGCTGGAGATGGAGGGGAGCCAGCGGGCACAGGAGAAG
Seq A exon
CTTCTCTGGGACTTGGAGCTGCTGACTGGGGTAGGGCTGGGCCTCTTCTGGCCCCCCTGGGCCGGGTACTGCAGCCAGAGGAGCCAGACTCAGTATGCACAGAGCCAGTGCAGCCAGTCCTGGGGCAGGAGTGTAGATGAAGACTTTGAGCAGCTG
Seq C2 exon
AGTTCCAAGCTGTGTCCTCCACCCCAGGCTGGGGAAGCCCACAGTGAGAGCCACCAGCTCCTGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059022-'48-53,'48-52,49-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.113 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGGAGCTACCTATGACAC
R:
CCCTTCAGGAGCTGGTGGC
Band lengths:
127-283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: