MmuEX6004260 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48402162-48403078:+
Coord C1 exon
chr6:48402162-48402333
Coord A exon
chr6:48402462-48402702
Coord C2 exon
chr6:48402934-48403078
Length
241 bp
Sequences
Splice sites
3' ss Seq
CCAATATTTTGTTCCCACAGAAC
3' ss Score
10.15
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTTCAGCCAGATGAGTACCATGAGACCTGTCTCTTTGCCTACTGTGTTGGAGCCACAGCAGGCAATGGCCCAGAGGGGCAACTGGAGGCTGTGTGTGCCACCTTTGCCAACTATGCCCAGGCCTGTGCCAGGCAGCACATCTATGTGCACTGGAGGAAGCCTGGCTTCTGTG
Seq A exon
AACGTGTGTGTCCAGGGGGGCAGCTCTACTCTGATTGTGTCTCATCCTGTCCACCCAGCTGTTCAGCAGTAGCCCAGGGAGAGGAGGGGTCTTGTGGGAAAGAGTGTGTGAGTGGCTGTGAGTGCCCAACAGGCCTCTTCTGGGATGGTGCCCTCTGTGTGCCTGCTGCCCACTGCCCCTGCTACCACCGGCGCCAGCGCTACGCTCCTGGTGACACCGTGAAACAGCAGTGCAATCCTTG
Seq C2 exon
TGTTTGCCAGGATGGTCGCTGGCACTGTGCCCAGGCCCTGTGCCCTGCTGAGTGTGCAGTGGGTGGTGATGGACATTACTTCACCTTTGATGGGCGGAGCTTCTTCTTCAGGGGCACTCCCGGCTGCCACTACAGCCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'10-11,'10-10,11-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(71.2=100)
A:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.1),PF0009313=VWC=PU(40.0=24.7),PF053758=Pacifastin_I=PU(37.5=14.8)
C2:
PF0009313=VWC=PD(58.0=59.2),PF053758=Pacifastin_I=PD(59.4=38.8),PF0009420=VWD=PU(19.9=61.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCCAGATGAGTACCATGA
R:
GGAGTGCCCCTGAAGAAGAAG
Band lengths:
292-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: