MmuEX6004904 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73205692-73212671:-
Coord C1 exon
chr6:73212436-73212671
Coord A exon
chr6:73208547-73208708
Coord C2 exon
chr6:73205692-73205954
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCATCTCTTACTTTCCAAAGCCA
3' ss Score
4.83
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
GAATAAGGATGGCTTTCCAAGGCACAGAGGATGAAATTGACCTGAAAAGTATTGAACACCAGGCAGAAGAAAATCCTATACTTGCCAGACTAAACAAAATAAAAGCAAAGGGAATTCTGAATTATGTGTCACTCAAAGAAAATGAACCTGAACCTCCAACCCTGGTATTTAGGCATACCACAAAAGCTCAAGAGAGGACCAGAAAGAGACAGCAGCCTGTGAAGCTGGAGCCTCTG
Seq A exon
CCAGTGCTAAAAGTCTACCAAGATCACAAGCAGCCCGAGTACATATATGAACAGAATCGACAGAAGCTCATGAGCTCTGGAATTCTTAAGCCATCACCAAGCACGGCTGACAGAGCTTCAATCATTAGTCTCGAGGCCCAAGAAGCTGTGAAAAGGAAACAG
Seq C2 exon
GTCCATCGACCCTCTGCAGATGTGTTCTCTCCTTCTCCGACTAAACTGCCCCGCACAAGTATTGGAAGAAGAGGGCTCTTTGGAATGAGGTCTTCAACTTATCCGACGTACACCTTCCATGACCGAGAAGAAGTCATTAAAGCCAACATTAGAGACCCCTTGCAAATCATCAAAATAGTACATGAGAATGAACATCTCGGATTCCTTTACATGATCTCTGCCGTACCCAAGTCTTCCATAGAATACGATACATATAATCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'3-5,'3-3,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.513 A=0.278 C2=0.193
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCCAAGGCACAGAGGAT
R:
GAACACATCTGCAGAGGGTCG
Band lengths:
252-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types