RnoEX0028544 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101148298-101158867:-
Coord C1 exon
chr4:101158767-101158867
Coord A exon
chr4:101150144-101150305
Coord C2 exon
chr4:101148298-101148560
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCATCTCTTACTTCCCAAAGCCA
3' ss Score
4.24
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
CTGAGAGTCCGAGGCTTTATGGACTTCCAAGATCAGCTCTGGGGTCCAGAGGCTGCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
CCAGTGCTAAAACTCTACCAAGATCATAAGCAGCCCGAGTACATATATGAACAGAATCGGCAGCAACTCATGAGCACTGGAATTCTAAAGCCATCACCAAGCATGATTGAAAGATCTTCAATTGGTAGTCTTGAGGCTCAAGAAGCTCTGAAAAGGAAACAG
Seq C2 exon
GTCCTTCGACCCTCTGCAGATGTGTTCTCTCTTTCTCCATCTAAACTGCCACGCACGAGTATTGGAAGGAGAGGGCTCTTTGGAATGAGGTCTTCAACTTACCCTAAGTACACCTTCAATGACCGAGAAGAAGTCGTCAAAGCCAACATCAGAGATCCCTTGCAAATCATCAAAATAGTGCATGAGAACGAACACCTCGGATTCCTGTACATGATTCCTGCAGTGCCCAAGTCTTCCATTGAATATGACACATATAATCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'0-3,'0-1,2-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.259 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCAGAGGCTGCTTTCTTT
R:
CGAGGTGTTCGTTCTCATGCA
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]