RnoEX0028545 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101142603-101150305:-
Coord C1 exon
chr4:101150144-101150305
Coord A exon
chr4:101148298-101148560
Coord C2 exon
chr4:101142603-101142870
Length
263 bp
Sequences
Splice sites
3' ss Seq
AATAATTTGCCCTCACTTAGGTC
3' ss Score
7.2
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCAGTGCTAAAACTCTACCAAGATCATAAGCAGCCCGAGTACATATATGAACAGAATCGGCAGCAACTCATGAGCACTGGAATTCTAAAGCCATCACCAAGCATGATTGAAAGATCTTCAATTGGTAGTCTTGAGGCTCAAGAAGCTCTGAAAAGGAAACAG
Seq A exon
GTCCTTCGACCCTCTGCAGATGTGTTCTCTCTTTCTCCATCTAAACTGCCACGCACGAGTATTGGAAGGAGAGGGCTCTTTGGAATGAGGTCTTCAACTTACCCTAAGTACACCTTCAATGACCGAGAAGAAGTCGTCAAAGCCAACATCAGAGATCCCTTGCAAATCATCAAAATAGTGCATGAGAACGAACACCTCGGATTCCTGTACATGATTCCTGCAGTGCCCAAGTCTTCCATTGAATATGACACATATAATCTAAA
Seq C2 exon
GGTCGTAAGTTATGAGAACATCAATAAAAATGACTACTACACAATTAGCAAAGACGCAGTTACCCACGTTTTCAACGATGACATCGAGTACATCGAGACTGAGCGGTGGGAACAGGAGTACCTGTACCACAGAGAGCTCACGAAGATCCCCATATTCTCACTCTTCCGGAAGTGGAAGGCTTTCAGCGTGTGGCGGAAAAACGTGCGCTCCAAGAAAATCACTGGCTGTCGAAAAGCGCTTCGAAAAAACCTGTTCATTGTTAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'2-5,'2-3,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGATCATAAGCAGCCCG
R:
GGGGATCTTCGTGAGCTCTCT
Band lengths:
297-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]