MmuEX6004905 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73195553-73208708:-
Coord C1 exon
chr6:73208547-73208708
Coord A exon
chr6:73205692-73205954
Coord C2 exon
chr6:73195553-73195820
Length
263 bp
Sequences
Splice sites
3' ss Seq
ACACACTTGTCCCTGTTTAGGTC
3' ss Score
9.69
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCAGTGCTAAAAGTCTACCAAGATCACAAGCAGCCCGAGTACATATATGAACAGAATCGACAGAAGCTCATGAGCTCTGGAATTCTTAAGCCATCACCAAGCACGGCTGACAGAGCTTCAATCATTAGTCTCGAGGCCCAAGAAGCTGTGAAAAGGAAACAG
Seq A exon
GTCCATCGACCCTCTGCAGATGTGTTCTCTCCTTCTCCGACTAAACTGCCCCGCACAAGTATTGGAAGAAGAGGGCTCTTTGGAATGAGGTCTTCAACTTATCCGACGTACACCTTCCATGACCGAGAAGAAGTCATTAAAGCCAACATTAGAGACCCCTTGCAAATCATCAAAATAGTACATGAGAATGAACATCTCGGATTCCTTTACATGATCTCTGCCGTACCCAAGTCTTCCATAGAATACGATACATATAATCTAAA
Seq C2 exon
GGTCGTAAGTTATGAGAACATCAATAAAAATGACTACTACACAATTAGCAAAGACGCGGTTACCCACGTTTACAATGATGACATCGAGTACATCGAGATTGAGCGATGGGAACAGGAGTACCTGTACCACAGAGAGCTCACGAAGATCCCCATCTTCGCTCTCTTCCGGAAGTGGAAGGCTTTCAGCGTGTGGAGGAAGAACGTGCGCTCCAAGAAAATCACTGGCTGTCGAAAAGCGCTTCGAAAAAACCTGTTCATTGTTAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'4-6,'4-5,5-6=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.193 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACATTATCCCCCAACGCTG
R:
CCTCGTAGGTTTCAACTTCACAGT
Band lengths:
222-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types