DreEX6031396 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21313385-21314798:+
Coord C1 exon
chr1:21313385-21313552
Coord A exon
chr1:21313635-21313909
Coord C2 exon
chr1:21314531-21314798
Length
275 bp
Sequences
Splice sites
3' ss Seq
TTTTTATGTGATCCTTTTAGGTG
3' ss Score
10.44
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
CCTGTTCTAAAGAGACGTAGTGGATATATGAAACCGTACAACAACCAGAAGCTGACTCCTAAGATGCCCTTTCAATTTGATGAGGTCCAGTCTATTGATTCTTCTACAGAGAGAGGACCCTCCGTATTACAGCTTCCCAAAATTCCACACTACATCAAAGATAGACAG
Seq A exon
GTGCAGTTGACTCAGGGCTCACTCAGGATACCCTCCCCACCTAAAAGAGTAAAAAGCTCCTCCAAAAGTTGCCCAGTTCCATCTCTGAGCTACACTCCCTCTCCACCGCTTTCTGGTTCACTGCTGTTTGACTCAGTGGATGAATTAATACGTGCTAAGATTTGCTCCCCACCCCACATCGTCCAAGCCATCCGGACTAACCCTCACCTGGGATTCTTCTATTTGACGTCTTCAGTACCTAAATCATCAATTAACTTTGACACATATAACCTCAA
Seq C2 exon
AATTGCAACATTTGGCAATATCAACAAGTCAGACTACTATACGGTTAGCACTCATGCAGTGACACATTACTGTGGGTCAGAAGTGGACTGTTTGCCTTTAGAGCGTTGGGAGCAGGAGTACCAATTTCACCGAAAGCTGTTGCGCATCCCTGTGTTTGCCCTATTTCGTAAGTGGAAGGCTTTCCGTGTGTGGTGTGCCAATGTACGCTATAAGAAAATCAGCAAATGCAGACGTTCACTACAAGAGAATCTCTTTGTTCTCAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.464 A=0.217 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGAGAGGACCCTCCGTA
R:
AGTGAACGTCTGCATTTGCTGA
Band lengths:
303-578
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]