MmuEX6004905 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73145547-73158702:-
Coord C1 exon
chr6:73158541-73158702
Coord A exon
chr6:73155686-73155948
Coord C2 exon
chr6:73145547-73145814
Length
263 bp
Sequences
Splice sites
3' ss Seq
ACACACTTGTCCCTGTTTAGGTC
3' ss Score
9.69
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CCAGTGCTAAAAGTCTACCAAGATCACAAGCAGCCCGAGTACATATATGAACAGAATCGACAGAAGCTCATGAGCTCTGGAATTCTTAAGCCATCACCAAGCACGGCTGACAGAGCTTCAATCATTAGTCTCGAGGCCCAAGAAGCTGTGAAAAGGAAACAG
Seq A exon
GTCCATCGACCCTCTGCAGATGTGTTCTCTCCTTCTCCGACTAAACTGCCCCGCACAAGTATTGGAAGAAGAGGGCTCTTTGGAATGAGGTCTTCAACTTATCCGACGTACACCTTCCATGACCGAGAAGAAGTCATTAAAGCCAACATTAGAGACCCCTTGCAAATCATCAAAATAGTACATGAGAATGAACATCTCGGATTCCTTTACATGATCTCTGCCGTACCCAAGTCTTCCATAGAATACGATACATATAATCTAAA
Seq C2 exon
GGTCGTAAGTTATGAGAACATCAATAAAAATGACTACTACACAATTAGCAAAGACGCGGTTACCCACGTTTACAATGATGACATCGAGTACATCGAGATTGAGCGATGGGAACAGGAGTACCTGTACCACAGAGAGCTCACGAAGATCCCCATCTTCGCTCTCTTCCGGAAGTGGAAGGCTTTCAGCGTGTGGAGGAAGAACGTGCGCTCCAAGAAAATCACTGGCTGTCGAAAAGCGCTTCGAAAAAACCTGTTCATTGTTAATCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.193 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACAAGCAGCCCGAGTAC
R:
GGGGATCTTCGTGAGCTCTCT
Band lengths:
292-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: