RnoEX0028547 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101140018-101148560:-
Coord C1 exon
chr4:101148298-101148560
Coord A exon
chr4:101142603-101142870
Coord C2 exon
chr4:101140018-101140152
Length
268 bp
Sequences
Splice sites
3' ss Seq
CAACTGGTACTCGCCCACAGGGT
3' ss Score
7.54
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GTCCTTCGACCCTCTGCAGATGTGTTCTCTCTTTCTCCATCTAAACTGCCACGCACGAGTATTGGAAGGAGAGGGCTCTTTGGAATGAGGTCTTCAACTTACCCTAAGTACACCTTCAATGACCGAGAAGAAGTCGTCAAAGCCAACATCAGAGATCCCTTGCAAATCATCAAAATAGTGCATGAGAACGAACACCTCGGATTCCTGTACATGATTCCTGCAGTGCCCAAGTCTTCCATTGAATATGACACATATAATCTAAA
Seq A exon
GGTCGTAAGTTATGAGAACATCAATAAAAATGACTACTACACAATTAGCAAAGACGCAGTTACCCACGTTTTCAACGATGACATCGAGTACATCGAGACTGAGCGGTGGGAACAGGAGTACCTGTACCACAGAGAGCTCACGAAGATCCCCATATTCTCACTCTTCCGGAAGTGGAAGGCTTTCAGCGTGTGGCGGAAAAACGTGCGCTCCAAGAAAATCACTGGCTGTCGAAAAGCGCTTCGAAAAAACCTGTTCATTGTTAATCCT
Seq C2 exon
TATCTCCGACCAGCTCTTCTTAAAATTAATGACATGTGCTATCAACTGAGCTTTATGGGACTTTGTTACATTGAAAAATTTCACACCTACACCCTGCAGGAATTCAAGGCTGCACAAGTCGTGCGAGTACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'3-6,'3-5,4-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGAGAGGGCTCTTTGGA
R:
CTGCAGGGTGTAGGTGTGAAA
Band lengths:
299-567
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]