HsaEX6014213 @ hg38
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84517819-84548417:+
Coord C1 exon
chr2:84517819-84518051
Coord A exon
chr2:84544233-84544500
Coord C2 exon
chr2:84548288-84548417
Length
268 bp
Sequences
Splice sites
3' ss Seq
CAATTTTTATTTGTTTATAGAGT
3' ss Score
6.24
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GAGTAAGGATGACTTTTCGGGCCACAGATAGTGAATTTGACCTGACAAATATTGAAGAGTATGCCGAAAATTCTGCACTTTCAAGACTGAATAATATAAAAGCCAAACAAAGAGTGAGTTATGTGACATCCACAGAAAATGAATCTGATACACAAATCCTAACGTTTAGGCACATTACAAAAGCTCAGGAGAAGACAAGAAAACGACAGCAGCCTATAAAACTAGAGCCTTTG
Seq A exon
AGTTGTAAGTTATGAGAACATCAATAAAAATGACTACTATACTATTAGCCAAAGGGCAGTAACACACATTTATAATGAAGACATTGAATTTATCGAAATTGATCGATGGGAACAGGAATATCTGTATCACAGAGAACTCACTAAGATTCCCATATTTTCACTGTTCCGGAAATGGAAGGCTTTTAGTGTATGGAGGAAGAATGTCCGCTCCAAGAAAATCACTGGATGTCAAAAATCTCTACAAAAAAATTTGTTCATTGTTAATCCT
Seq C2 exon
ATTATCATAAAGTGCAGAGCAGTGGAAGTTTCATTAATACACCACATGAGTTGCCCACTTATGGAGACTCTGAGAAAATGACATATACAGAACAGGCCAGCAAAAGGCATTATTGCATGAGGCTGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423_MULTIEX2-4/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000389394fB13995
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGACTTTTCGGGCCAC
R:
TCAGAGTCTCCATAAGTGGGCA
Band lengths:
302-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains