DreEX0027489 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21313635-21315217:+
Coord C1 exon
chr1:21313635-21313909
Coord A exon
chr1:21314531-21314798
Coord C2 exon
chr1:21315083-21315217
Length
268 bp
Sequences
Splice sites
3' ss Seq
CAGATATACTCTTTCAACAGAAT
3' ss Score
5.91
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GTGCAGTTGACTCAGGGCTCACTCAGGATACCCTCCCCACCTAAAAGAGTAAAAAGCTCCTCCAAAAGTTGCCCAGTTCCATCTCTGAGCTACACTCCCTCTCCACCGCTTTCTGGTTCACTGCTGTTTGACTCAGTGGATGAATTAATACGTGCTAAGATTTGCTCCCCACCCCACATCGTCCAAGCCATCCGGACTAACCCTCACCTGGGATTCTTCTATTTGACGTCTTCAGTACCTAAATCATCAATTAACTTTGACACATATAACCTCAA
Seq A exon
AATTGCAACATTTGGCAATATCAACAAGTCAGACTACTATACGGTTAGCACTCATGCAGTGACACATTACTGTGGGTCAGAAGTGGACTGTTTGCCTTTAGAGCGTTGGGAGCAGGAGTACCAATTTCACCGAAAGCTGTTGCGCATCCCTGTGTTTGCCCTATTTCGTAAGTGGAAGGCTTTCCGTGTGTGGTGTGCCAATGTACGCTATAAGAAAATCAGCAAATGCAGACGTTCACTACAAGAGAATCTCTTTGTTCTCAATGAG
Seq C2 exon
TCTCTGCGACCGGCACTAATTGACATCAGGGAAATGTGTTACCACATCAGTGACATGCCACTTTGTCGACTAGAGAAAGACCACACATTTACACTGAAGGAGTTTCAGAGAGCACAATACACACAGCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGGGCTCACTCAGGAT
R:
ATGTCAATTAGTGCCGGTCGC
Band lengths:
293-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]