MmuEX6004906 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73192900-73205954:-
Coord C1 exon
chr6:73205692-73205954
Coord A exon
chr6:73195553-73195820
Coord C2 exon
chr6:73192900-73193034
Length
268 bp
Sequences
Splice sites
3' ss Seq
CGATTGGTATTCACCCACAGGGT
3' ss Score
7.89
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GTCCATCGACCCTCTGCAGATGTGTTCTCTCCTTCTCCGACTAAACTGCCCCGCACAAGTATTGGAAGAAGAGGGCTCTTTGGAATGAGGTCTTCAACTTATCCGACGTACACCTTCCATGACCGAGAAGAAGTCATTAAAGCCAACATTAGAGACCCCTTGCAAATCATCAAAATAGTACATGAGAATGAACATCTCGGATTCCTTTACATGATCTCTGCCGTACCCAAGTCTTCCATAGAATACGATACATATAATCTAAA
Seq A exon
GGTCGTAAGTTATGAGAACATCAATAAAAATGACTACTACACAATTAGCAAAGACGCGGTTACCCACGTTTACAATGATGACATCGAGTACATCGAGATTGAGCGATGGGAACAGGAGTACCTGTACCACAGAGAGCTCACGAAGATCCCCATCTTCGCTCTCTTCCGGAAGTGGAAGGCTTTCAGCGTGTGGAGGAAGAACGTGCGCTCCAAGAAAATCACTGGCTGTCGAAAAGCGCTTCGAAAAAACCTGTTCATTGTTAATCCT
Seq C2 exon
TATCTACGACCCGCTCTTCTTAAAATCAATGAGATGTGCTACCTGCTGAGTTTTATGGGACTCTGTTACATTGAAAAATTCCACACCTACACCCTGCAGGAGTTCAAGGCTGCACAAATAGTGCGACTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'5-7,'5-6,6-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACGTACACCTTCCATGA
R:
TCCTGCAGTCGCACTATTTGT
Band lengths:
296-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types