HsaEX6014213 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84756028-84774526:+
Coord C1 exon
chr2:84756028-84756290
Coord A exon
chr2:84771357-84771624
Coord C2 exon
chr2:84774392-84774526
Length
268 bp
Sequences
Splice sites
3' ss Seq
CAATTTTTATTTGTTTATAGAGT
3' ss Score
6.24
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
ATTCATCGGCCCTATGTTGAGGTGTTCTCTCCCTCTCCTCCTAAACTGCCACATACTGGTATTGGAAAAAGAGGTCTCTTTGGGACTAGATCTTCAGCTTACCCTAAGTACACTTTTCACGACCGAGAAGAAGTTGTTAAAGCCAACATTCGTGATCCCTTGCAAATCATTAAAATAATACGTGAAAATGAACATCTTGGATTTCTTTATATGATCCCTGCAGTGCCAAGATCATCCATTGAATATGATACATATAATCTAAA
Seq A exon
AGTTGTAAGTTATGAGAACATCAATAAAAATGACTACTATACTATTAGCCAAAGGGCAGTAACACACATTTATAATGAAGACATTGAATTTATCGAAATTGATCGATGGGAACAGGAATATCTGTATCACAGAGAACTCACTAAGATTCCCATATTTTCACTGTTCCGGAAATGGAAGGCTTTTAGTGTATGGAGGAAGAATGTCCGCTCCAAGAAAATCACTGGATGTCAAAAATCTCTACAAAAAAATTTGTTCATTGTTAATCCT
Seq C2 exon
CATTTGCGACCAGCTCTTCTTAAAATAAATGAATTGTGTTATCATTTGAGTTTTATGGGACTTTGTTATATTGAAAAGTGTCACACCTACACCCTGCAGGAATTTAAGGCCGCACAAGTCATACGGCTAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'3-5,'3-4,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTAGATCTTCAGCTTACCCT
R:
CGTATGACTTGTGCGGCCTTA
Band lengths:
307-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)