HsaEX6014212 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84771357-84774736:+
Coord C1 exon
chr2:84771357-84771624
Coord A exon
chr2:84774392-84774526
Coord C2 exon
chr2:84774616-84774736
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAATTCCTATTTTCATTCAGCAT
3' ss Score
5.51
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
AGTTGTAAGTTATGAGAACATCAATAAAAATGACTACTATACTATTAGCCAAAGGGCAGTAACACACATTTATAATGAAGACATTGAATTTATCGAAATTGATCGATGGGAACAGGAATATCTGTATCACAGAGAACTCACTAAGATTCCCATATTTTCACTGTTCCGGAAATGGAAGGCTTTTAGTGTATGGAGGAAGAATGTCCGCTCCAAGAAAATCACTGGATGTCAAAAATCTCTACAAAAAAATTTGTTCATTGTTAATCCT
Seq A exon
CATTTGCGACCAGCTCTTCTTAAAATAAATGAATTGTGTTATCATTTGAGTTTTATGGGACTTTGTTATATTGAAAAGTGTCACACCTACACCCTGCAGGAATTTAAGGCCGCACAAGTCATACGGCTAGCAGAG
Seq C2 exon
GTGACAGAACGCCTAGGAGAATTTCGAAATGAGGCAAAATATGTAGTCAGGAGGGCTTGTCGATTTGCTTTGCGTGCTGCAGGATTTGTTCCTGATGACTGTGCATTTGGACCTTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'5-6,'5-5,6-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAATTGATCGATGGGAACAGG
R:
ACGCAAAGCAAATCGACAAGC
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)