RnoEX6013904 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101139420-101142870:-
Coord C1 exon
chr4:101142603-101142870
Coord A exon
chr4:101140018-101140152
Coord C2 exon
chr4:101139420-101139546
Length
135 bp
Sequences
Splice sites
3' ss Seq
TAATTCTTCTTTTCACCCAGTAT
3' ss Score
4.87
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGTCGTAAGTTATGAGAACATCAATAAAAATGACTACTACACAATTAGCAAAGACGCAGTTACCCACGTTTTCAACGATGACATCGAGTACATCGAGACTGAGCGGTGGGAACAGGAGTACCTGTACCACAGAGAGCTCACGAAGATCCCCATATTCTCACTCTTCCGGAAGTGGAAGGCTTTCAGCGTGTGGCGGAAAAACGTGCGCTCCAAGAAAATCACTGGCTGTCGAAAAGCGCTTCGAAAAAACCTGTTCATTGTTAATCCT
Seq A exon
TATCTCCGACCAGCTCTTCTTAAAATTAATGACATGTGCTATCAACTGAGCTTTATGGGACTTTGTTACATTGAAAAATTTCACACCTACACCCTGCAGGAATTCAAGGCTGCACAAGTCGTGCGAGTACAGGAG
Seq C2 exon
ATTACTTTAAGATCAACATTGCAAGTTTTATCGACGCTCCGTCTGATTTACCCACTTACGGAGAATCTGAAAAAATGACCTACACAGAACAGGCCAGCAAAAGACATCACTGCATGAGGCTCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'4-8,'4-6,5-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACAGAGAGCTCACGAAGA
R:
TTTTGCTGGCCTGTTCTGTGT
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]