RnoEX6013905 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101139420-101140152:-
Coord C1 exon
chr4:101140018-101140152
Coord A exon
chr4:101139810-101139930
Coord C2 exon
chr4:101139420-101139546
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACATACCCATGAATGTGTAGGTG
3' ss Score
5.17
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
TATCTCCGACCAGCTCTTCTTAAAATTAATGACATGTGCTATCAACTGAGCTTTATGGGACTTTGTTACATTGAAAAATTTCACACCTACACCCTGCAGGAATTCAAGGCTGCACAAGTCGTGCGAGTACAGGAG
Seq A exon
GTGACAGAGCGCCTGGAATATTTCCGATTCGAGGCAAAAGACGTGGTCAGGAAGTCGTGCCGCTTCGCCTTACGTGCTGCGGGATTTATTCCTGACGACTGTGAAGTGGAAACTCATGAGG
Seq C2 exon
ATTACTTTAAGATCAACATTGCAAGTTTTATCGACGCTCCGTCTGATTTACCCACTTACGGAGAATCTGAAAAAATGACCTACACAGAACAGGCCAGCAAAAGACATCACTGCATGAGGCTCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'5-8,'5-7,6-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCGACCAGCTCTTCTTAA
R:
GTGAGCCTCATGCAGTGATGT
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]