HsaEX6014211 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84774392-84775541:+
Coord C1 exon
chr2:84774392-84774526
Coord A exon
chr2:84774616-84774736
Coord C2 exon
chr2:84775412-84775541
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACATATTCAACAATATCTAGGTG
3' ss Score
4.96
5' ss Seq
AGGGTATGA
5' ss Score
6.84
Exon sequences
Seq C1 exon
CATTTGCGACCAGCTCTTCTTAAAATAAATGAATTGTGTTATCATTTGAGTTTTATGGGACTTTGTTATATTGAAAAGTGTCACACCTACACCCTGCAGGAATTTAAGGCCGCACAAGTCATACGGCTAGCAGAG
Seq A exon
GTGACAGAACGCCTAGGAGAATTTCGAAATGAGGCAAAATATGTAGTCAGGAGGGCTTGTCGATTTGCTTTGCGTGCTGCAGGATTTGTTCCTGATGACTGTGCATTTGGACCTTTTGAGG
Seq C2 exon
ATTATCATAAAGTGCAGAGCAGTGGAAGTTTCATTAATACACCACATGAGTTGCCCACTTATGGAGACTCTGAGAAAATGACATATACAGAACAGGCCAGCAAAAGGCATTATTGCATGAGGCTGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'6-7,'6-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACCAGCTCTTCTTAAAATAA
R:
CGTCAGCCTCATGCAATAATG
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)