DreEX0027493 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21315083-21317274:+
Coord C1 exon
chr1:21315083-21315217
Coord A exon
chr1:21316600-21316714
Coord C2 exon
chr1:21317160-21317274
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTTGTGTATCTGAGTTCTAGGTG
3' ss Score
3.96
5' ss Seq
CTGGTAATC
5' ss Score
3.45
Exon sequences
Seq C1 exon
TCTCTGCGACCGGCACTAATTGACATCAGGGAAATGTGTTACCACATCAGTGACATGCCACTTTGTCGACTAGAGAAAGACCACACATTTACACTGAAGGAGTTTCAGAGAGCACAATACACACAGCTGGAGGAG
Seq A exon
GTGTCATCCCGTTTGGAGAAGTTCAGAGAGCTGGTAATGGAAGTGGCTAGAAATGCATGTCGAAATGCTTTGAAAGAGTTTGGACACACACCTGATTATGGCGAAGTGGAAACTG
Seq C2 exon
ATGGCAATGAAGAATTAGCATCACCTGCTTTTAAATTGGTCTTTGAGGACACACCTGAGAAGATTACTTACACGCAGCAAGCCAACAAGAGCTACCACTGCAAACGCCTTACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'5-7,'5-6,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGACCGGCACTAATTGACAT
R:
AAGTAAGGCGTTTGCAGTGGT
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]