MmuEX6004908 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73142307-73143028:-
Coord C1 exon
chr6:73142894-73143028
Coord A exon
chr6:73142687-73142807
Coord C2 exon
chr6:73142307-73142433
Length
121 bp
Sequences
Splice sites
3' ss Seq
ACATACCCATGACCGTTTAGGTG
3' ss Score
5.99
5' ss Seq
AGGGTATGG
5' ss Score
7
Exon sequences
Seq C1 exon
TATCTACGACCCGCTCTTCTTAAAATCAATGAGATGTGCTACCTGCTGAGTTTTATGGGACTCTGTTACATTGAAAAATTCCACACCTACACCCTGCAGGAGTTCAAGGCTGCACAAATAGTGCGACTGCAGGAG
Seq A exon
GTGACAGAGCGCCTGGAAGTTTTCCGATGCGCGGCAAAAGACGTGGTCCGGAAGTCGTGCCGCTTTGCCTTACGCGCTGCGGGATTTATTCCCGATGACTGTGAAGTTGAAACCTACGAGG
Seq C2 exon
ATTACTTTAAGGCCAACATTGCAAGTCTTGTCGATGGTCCGTTTGATTTACCCACTTATGGAGAATCTGAAAAAATGACCTACACAGAACAGGCCAGCAAAAGGCATCATTGCATGAGGCTCACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACCCGCTCTTCTTAAAATCA
R:
TGTGAGCCTCATGCAATGATG
Band lengths:
255-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: