HsaEX6014212 @ hg38
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84517819-84548417:+
Coord C1 exon
chr2:84517819-84518051
Coord A exon
chr2:84547268-84547402
Coord C2 exon
chr2:84548288-84548417
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAATTCCTATTTTCATTCAGCAT
3' ss Score
5.51
5' ss Seq
GAGGTAACA
5' ss Score
8.1
Exon sequences
Seq C1 exon
GAGTAAGGATGACTTTTCGGGCCACAGATAGTGAATTTGACCTGACAAATATTGAAGAGTATGCCGAAAATTCTGCACTTTCAAGACTGAATAATATAAAAGCCAAACAAAGAGTGAGTTATGTGACATCCACAGAAAATGAATCTGATACACAAATCCTAACGTTTAGGCACATTACAAAAGCTCAGGAGAAGACAAGAAAACGACAGCAGCCTATAAAACTAGAGCCTTTG
Seq A exon
CATTTGCGACCAGCTCTTCTTAAAATAAATGAATTGTGTTATCATTTGAGTTTTATGGGACTTTGTTATATTGAAAAGTGTCACACCTACACCCTGCAGGAATTTAAGGCCGCACAAGTCATACGGCTAGCAGAG
Seq C2 exon
ATTATCATAAAGTGCAGAGCAGTGGAAGTTTCATTAATACACCACATGAGTTGCCCACTTATGGAGACTCTGAGAAAATGACATATACAGAACAGGCCAGCAAAAGGCATTATTGCATGAGGCTGACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423_MULTIEX2-5/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=0.000 C2=0.066
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000389394fB13995
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGACTTTTCGGGCCAC
R:
ACTTCCACTGCTCTGCACTTT
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains