MmuEX6004938 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73063459-73068153:-
Coord C1 exon
chr6:73067996-73068153
Coord A exon
chr6:73064572-73064703
Coord C2 exon
chr6:73063459-73063630
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATTGCTTTCTCTCCACACAGGAT
3' ss Score
10.65
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCACCAGGAAATAAACAAGTGGTGATTTTTGTTGATGATCTGAATATGCCCCGGCTGGACCGCTATGGCTCCCAACCACCAATTGAACTGCTTCGGCAGTATCAAGATTTTGGTGGATTCTATGATAGAAACAAACTCTTTTGGAAAGAAATACAG
Seq A exon
GATGTAACAATTGTGTCAGCATGTGCACCTCCAGGAGGGGGACGCAATCCTGTGACACCCCGCTTCATCCGACACTTCAGCATGCTGTGTCTCCCGATGCCCTCGGAGCACAGTCTGAAGCAGATATTCCAG
Seq C2 exon
GCCATCTTGAATGGCTTCCTGGCTGACTTCCCAGAAGCAGTAAAGCAAACGTCATCAAATATTGTAGAAGCTGCAGTTGAGATTTATAACAGGATGAGTGTCGATCTCCTGCCAACCCCAGCCAAGTCCCATTATGTCTTTAACCTGAGAGACTTATCCAAGTGTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'41-41,'41-40,42-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(19.1=100)
A:
PF127752=AAA_7=FE(15.8=100)
C2:
PF127752=AAA_7=FE(21.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTGAATATGCCCCGGCTG
R:
ATAATGGGACTTGGCTGGGGT
Band lengths:
255-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: