HsaEX6014180 @ hg38
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84672327-84685472:+
Coord C1 exon
chr2:84672327-84672484
Coord A exon
chr2:84677005-84677136
Coord C2 exon
chr2:84685326-84685472
Length
132 bp
Sequences
Splice sites
3' ss Seq
GTGGATTTCTCTGCACACAGGAT
3' ss Score
6.12
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGCACCGGGAAACAAACGAATTGTGATTTTTGTTGATGATTTAAACATGCCCAGACTGGATCGCTATGGCTCTCAGCCTCCGATTGAATTACTTCGGCAGTATCAAGATTTTGGGGGATTTTATGACAGAAACAAACTGTTTTGGAAAGAAATACAG
Seq A exon
GATGTAACAATCATATCGGCATGTGCACCTCCAGGCGGTGGCCGCAACCCTGTGACTCCCCGCTTCATCAGACACTTCAGCATGCTGTGCCTCCCAATGCCCTCAGAGCACAGTCTGAAACAGATTTTTCAG
Seq C2 exon
GTATCCTCCAATGTGATCCAGGAACAATAAGAGAAGAAATTCAGATATTTAGACTCTTTTGCCATGAGTGCCAAAGGGTCTTCCATGATCGCTTGATTAATAATGAAGATAAGCACTATTTCCATGTTATTCTGACAGAAATGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423_MULTIEX3-1/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(19.1=100)
A:
PF127752=AAA_7=FE(15.8=100)
C2:
PF127752=AAA_7=PD(8.1=44.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCGGGAAACAAACGAAT
R:
CATGGAAGACCCTTTGGCACT
Band lengths:
244-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains