MmuEX6004941 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73049998-73053286:-
Coord C1 exon
chr6:73053140-73053286
Coord A exon
chr6:73051851-73051924
Coord C2 exon
chr6:73049998-73050152
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTGTTTGTTAACAGACA
3' ss Score
8.73
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTATTCTCCAATGTGATCCAGGAACAATAAGAGAAGAACTTCAGATATTTAGACTGTTTTGCCACGAATGTCAAAGAGTGTTCCATGACCGCCTGATCAATAATGAAGACAAACACTACTTCCATCTCATTTTGACAGAAATGGCCA
Seq A exon
ACAAGCACTTTGGAATTGCAATTGACCTGGAATACTTTTTAAGCAAGCCCATCATATTTGGGGATTTCATTAAG
Seq C2 exon
TTTGGAGCAGAGAAGTCTGACCGCATCTACGATGATTTACCCGACATGGAGAAAATCGAGAATGTTCTGCAGGACTATCTCGATGACTATAACCTCACAAACCCTAAGGAAGTCAAGCTGGTGTTCTTCCAGGATGCCATAGAGCACGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'44-44,'44-43,45-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=44.0)
A:
NO
C2:
PF127802=AAA_8=PU(8.1=42.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAATGTGATCCAGGAACA
R:
GATGCGGTCAGACTTCTCTGC
Band lengths:
170-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: