HsaEX6014177 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84912450-84915717:+
Coord C1 exon
chr2:84912450-84912596
Coord A exon
chr2:84913608-84913681
Coord C2 exon
chr2:84915563-84915717
Length
74 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTGTTCTTTAAATAGACA
3' ss Score
6.78
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GTATCCTCCAATGTGATCCAGGAACAATAAGAGAAGAAATTCAGATATTTAGACTCTTTTGCCATGAGTGCCAAAGGGTCTTCCATGATCGCTTGATTAATAATGAAGATAAGCACTATTTCCATGTTATTCTGACAGAAATGGCCA
Seq A exon
ACAAACATTTTGGAATTGCAATTGACCTGGAATATTTTTTGAATAAGCCCATCATATTTGGAGATTTCATTAAG
Seq C2 exon
TTTGGAGCAGATAAAGCTGATCGGATTTATGATGACATGCCTGATATAGAGAAAACTGCAAATGTTCTACAGGACTATCTTGATGATTATAATCTCACAAATCCCAAAGAAGTAAAGTTGGTGTTCTTCCAGGATGCTATAGAACATGTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'46-46,'46-45,47-46=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PD(8.1=44.0)
A:
PF127752=AAA_7=PD(3.8=40.0)
C2:
PF127802=AAA_8=PU(13.9=42.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAATGTGATCCAGGAACA
R:
CCGATCAGCTTTATCTGCTCCA
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)