HsaEX6014178 @ hg19
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein, axonemal, heavy chain 6 [Source:HGNC Symbol;Acc:2951]
Coordinates
chr2:84908481-84913681:+
Coord C1 exon
chr2:84908481-84908652
Coord A exon
chr2:84912450-84912596
Coord C2 exon
chr2:84913608-84913681
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTTAAAAAACAGGTA
3' ss Score
7.44
5' ss Seq
CCAGTAAAT
5' ss Score
1.53
Exon sequences
Seq C1 exon
GCCATCTTAAATGGTTTCCTGAGTGACTTTCCACCAGCTGTAAAGCAAACTGCATCAAGCATTGTAGAAGCCTCAGTTGAGATTTATAACAAAATGAGTGTTGACCTCCTGCCAACACCCGCCAAGTCCCATTATGTCTTTAACTTGAGGGACTTATCCAAATGTGTGCAAG
Seq A exon
GTATCCTCCAATGTGATCCAGGAACAATAAGAGAAGAAATTCAGATATTTAGACTCTTTTGCCATGAGTGCCAAAGGGTCTTCCATGATCGCTTGATTAATAATGAAGATAAGCACTATTTCCATGTTATTCTGACAGAAATGGCCA
Seq C2 exon
ACAAACATTTTGGAATTGCAATTGACCTGGAATATTTTTTGAATAAGCCCATCATATTTGGAGATTTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'45-45,'45-44,46-45=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.0=100)
A:
PF127752=AAA_7=PD(8.1=44.0)
C2:
PF127752=AAA_7=PD(3.8=40.0)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTTAAATGGTTTCCTGAGTGACT
R:
TAATGAAATCTCCAAATATGATGGGC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)