MmuEX6004940 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73101857-73113636:-
Coord C1 exon
chr6:73113465-73113636
Coord A exon
chr6:73103146-73103292
Coord C2 exon
chr6:73101857-73101930
Length
147 bp
Sequences
Splice sites
3' ss Seq
AAACAAACAAACAAATACAGGTA
3' ss Score
0.05
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCCATCTTGAATGGCTTCCTGGCTGACTTCCCAGAAGCAGTAAAGCAAACGTCATCAAATATTGTAGAAGCTGCAGTTGAGATTTATAACAGGATGAGTGTCGATCTCCTGCCAACCCCAGCCAAGTCCCATTATGTCTTTAACCTGAGAGACTTATCCAAGTGTGTGCAAG
Seq A exon
GTATTCTCCAATGTGATCCAGGAACAATAAGAGAAGAACTTCAGATATTTAGACTGTTTTGCCACGAATGTCAAAGAGTGTTCCATGACCGCCTGATCAATAATGAAGACAAACACTACTTCCATCTCATTTTGACAGAAATGGCCA
Seq C2 exon
ACAAGCACTTTGGAATTGCAATTGACCTGGAATACTTTTTAAGCAAGCCCATCATATTTGGGGATTTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'46-48,'46-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.0=100)
A:
PF127752=AAA_7=PD(8.1=44.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAATGGCTTCCTGGCTGAC
R:
CCAAATATGATGGGCTTGCTTAA
Band lengths:
227-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types