RnoEX6013933 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101030378-101033669:-
Coord C1 exon
chr4:101033498-101033669
Coord A exon
chr4:101031721-101031867
Coord C2 exon
chr4:101030378-101030451
Length
147 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTAAAAAATACACAGGTA
3' ss Score
5.09
5' ss Seq
CCAGTAAAT
5' ss Score
1.53
Exon sequences
Seq C1 exon
GCCATCTTGAATGGCTTCCTGGCTGACTTTACAGAAGCAGTAAAGCAAACTTCATCAAACATTGTAGAGGCCGCAGTTGAGATTTATAACAGGATGAGTGTCGATCTCCTGCCAACCCCAGCCAAGTCCCATTACGTCTTTAACCTGAGAGACTTATCCAAGTGTGTGCAAG
Seq A exon
GTATTCTCCAATGTGACCCGGGAACAATAAGAGAAGAAATGCAGATATTTAGACTATTTTGCCACGAATGTCAGAGAGTGTTCCATGACCGCCTGATCAATAACGAAGACAAGCACTACTTCCATGTCATTTTGACAGAAATGGCCA
Seq C2 exon
ACAAGCACTTTGGGATTGCGATTGACCTGGAATACTTCCTAAGCAAGCCCATCATATTTGGTGATTTCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'42-47,'42-46,44-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.0=100)
A:
PF127752=AAA_7=PD(8.1=44.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTTGAATGGCTTCCTGGCT
R:
TAATGAAATCACCAAATATGATGGGC
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]