MmuEX6004945 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73036054-73039717:-
Coord C1 exon
chr6:73039577-73039717
Coord A exon
chr6:73037546-73037788
Coord C2 exon
chr6:73036054-73036221
Length
243 bp
Sequences
Splice sites
3' ss Seq
GATTGCCTTTTTATTTACAGTGG
3' ss Score
7.56
5' ss Seq
TCAGTACGT
5' ss Score
5.95
Exon sequences
Seq C1 exon
GTGTTTCAATATTTCATCAGCAGAGTACGACAGAAGCTGCACATAGTTCTCTGCATGAGCCCGGTTGGCGAGGCCTTCAGGTCCCGATGCCGGATGTTTCCCTCCCTGGTAAACTGCTGCACCATTGACTGGTTTGTCCAG
Seq A exon
TGGCCCAGGGAAGCGCTCCTGTCTGTATCAAAGTCATTCTTCTCATCTGTCGACACTGGAAACGATGATCTAAGAGAAAAGCTTTCCCTCATGTGTGTGAACGTGCACCTGAGCGTCTCCCACATGGCGGAGCGTTACTACAACGAACTGCGCAGGCGCTACTACACCACGCCCACCTCCTACCTGGAGCTCATCAATCTCTACCTGACCATGCTCACTGAGAAAAGGAAGCAGTTAGTTTCA
Seq C2 exon
GCACGAGATCGTGTAAAGAATGGTCTCACCAAGCTACTAGAAACAAATGTACTAGTAGATAAAATGAAATTAGACCTTTCGGCTTTAGAACCTGTGCTACTACAGAAATCACAAGATGTTGAAGCCCTGATGGAAAAACTAGTGGTGGACCAAGAAAGTGCTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'49-49,'49-48,50-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.0=100)
A:
PF127802=AAA_8=PD(26.3=87.7)
C2:
PF127772=MT=PU(15.8=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAGAGTACGACAGAAGCT
R:
TGATCAGCACTTTCTTGGTCCAC
Band lengths:
292-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: