RnoEX0028553 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101015361-101019059:-
Coord C1 exon
chr4:101018919-101019059
Coord A exon
chr4:101016876-101017118
Coord C2 exon
chr4:101015361-101015528
Length
243 bp
Sequences
Splice sites
3' ss Seq
AGGATGTTTTTCATTTACAGTGG
3' ss Score
6.89
5' ss Seq
TCAGTATGT
5' ss Score
5
Exon sequences
Seq C1 exon
GTGTTTCAATATTTCATCAGCAGAGTACGACAGAAGCTGCACATAGTTCTCTGCATGAGCCCGGTTGGCGAGGCCTTCAGGTCCCGATGCCGGATGTTTCCATCCCTGGTGAACTGCTGCACCATTGACTGGTTTGTCCAG
Seq A exon
TGGCCCAGAGAAGCGCTTCTGTCCGTATCGAAGTCATTTTTCTCAGTTGTCGACACTGGAAACGAAGAACTAAAAGAAAAACTTTCCCTCATGTGTGTGAACGTGCACCTGAGTGTCTCCCACATGGCAGATCGCTACTACAGCGAGCTGCGCAGGCGCTACTACACCACGCCCACCTCCTACCTGGAGCTCATCAATCTCTACCTGACCATGCTCACTGAAAAGAGGAAACAGCTAGTTTCA
Seq C2 exon
GCACGAGATCGTGTAACGAATGGTCTCACCAAGCTATTAGAAACAAATATATTAGTAGATAAAATGAAATTAGACCTTTCGGCTTTAGAACCTGTGCTATTCCAGAAATCACAAGACGTCGAAGCCCTGATGGAAAAACTAGTGGTGGACCAAGAAAGTGCTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'49-53,'49-52,51-53
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(17.0=100)
A:
PF127802=AAA_8=PD(26.3=87.7)
C2:
PF127772=MT=PU(15.8=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCAGAGTACGACAGAAGCT
R:
TGATCAGCACTTTCTTGGTCCAC
Band lengths:
292-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]