RnoEX0028554 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101013931-101017118:-
Coord C1 exon
chr4:101016876-101017118
Coord A exon
chr4:101015361-101015528
Coord C2 exon
chr4:101013931-101014166
Length
168 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTGTTGTCATTTAGGCA
3' ss Score
7.85
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
TGGCCCAGAGAAGCGCTTCTGTCCGTATCGAAGTCATTTTTCTCAGTTGTCGACACTGGAAACGAAGAACTAAAAGAAAAACTTTCCCTCATGTGTGTGAACGTGCACCTGAGTGTCTCCCACATGGCAGATCGCTACTACAGCGAGCTGCGCAGGCGCTACTACACCACGCCCACCTCCTACCTGGAGCTCATCAATCTCTACCTGACCATGCTCACTGAAAAGAGGAAACAGCTAGTTTCA
Seq A exon
GCACGAGATCGTGTAACGAATGGTCTCACCAAGCTATTAGAAACAAATATATTAGTAGATAAAATGAAATTAGACCTTTCGGCTTTAGAACCTGTGCTATTCCAGAAATCACAAGACGTCGAAGCCCTGATGGAAAAACTAGTGGTGGACCAAGAAAGTGCTGATCAG
Seq C2 exon
GTCCGTAATGTTGTGCAAGAAGATGAAGCAATAGCAAAGGTGAAAGCTGAAGAGACTCAAGCGATTGCTGATGATGCCCAGAGAGACCTGGAAGAGGCACTCCCTGCCCTTGAGGCTGCCAATAAAGCACTGGATTCCTTAGACAAAGCAGATATCTCTGAAATCCGAGTCTTCACAAAGCCCCCTGACTTGGTCATGACTGTGATGGAAGCCATCTCCATCCTCTTAAATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'51-54,'51-53,52-54
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(26.3=87.7)
A:
PF127772=MT=PU(15.8=94.6)
C2:
PF127772=MT=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTGCACCTGAGTGTCTC
R:
GTGCCTCTTCCAGGTCTCTCT
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]