MmuEX6004946 @ mm9
Exon Skipping
Gene
ENSMUSG00000052861 | Dnahc6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73034645-73037788:-
Coord C1 exon
chr6:73037546-73037788
Coord A exon
chr6:73036054-73036221
Coord C2 exon
chr6:73034645-73034880
Length
168 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTTGTTGTCATTTAGGCA
3' ss Score
8.19
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
TGGCCCAGGGAAGCGCTCCTGTCTGTATCAAAGTCATTCTTCTCATCTGTCGACACTGGAAACGATGATCTAAGAGAAAAGCTTTCCCTCATGTGTGTGAACGTGCACCTGAGCGTCTCCCACATGGCGGAGCGTTACTACAACGAACTGCGCAGGCGCTACTACACCACGCCCACCTCCTACCTGGAGCTCATCAATCTCTACCTGACCATGCTCACTGAGAAAAGGAAGCAGTTAGTTTCA
Seq A exon
GCACGAGATCGTGTAAAGAATGGTCTCACCAAGCTACTAGAAACAAATGTACTAGTAGATAAAATGAAATTAGACCTTTCGGCTTTAGAACCTGTGCTACTACAGAAATCACAAGATGTTGAAGCCCTGATGGAAAAACTAGTGGTGGACCAAGAAAGTGCTGATCAG
Seq C2 exon
GTCCGTAATGTTGTGCAAGAAGATGAAGCAATAGCAAAGGTGAAAGCTGAAGAGACTCAAGCGATCGCTGATGATGCCCAGAGAGACCTGGAGGAGGCACTCCCCGCCCTCGAAGCTGCCAATAAAGCACTGGATTCCTTAGACAAAGCAGATATCTCTGAAATCAGAGTCTTCACAAAGCCCCCCGACTTGGTCATGACTGTGATGGAAGCCATCTCCATCCTCTTAAATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'50-50,'50-49,51-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(26.3=87.7)
A:
PF127772=MT=PU(15.8=94.6)
C2:
PF127772=MT=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACCATGCTCACTGAGA
R:
CACAGTCATGACCAAGTCGGG
Band lengths:
245-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: