DreEX6031357 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21409464-21412788:+
Coord C1 exon
chr1:21409464-21409706
Coord A exon
chr1:21411385-21411552
Coord C2 exon
chr1:21412553-21412788
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATGTGCTTTGATCTACACAGGCA
3' ss Score
7.91
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
TGGCCCCGTGAAGCTCTGCTATCTGTGTCTCAGACCTTCTTCCAGAATGTGGAGTTTGGCAGTGAGGAGATGAAGCAGTGCTTTTCAGAGATGTGTGTGGAGATTCATGTTAGTGTGACTGACATGGCTGAGCGTTTTTACTCAGAACTAAGGAGACACTACTACACCACACCGACCTCCTATTTGGAGCTCATTAACCTGTACCTGGGCATGCTGGGAGAAAAGAGACAACAGCTGCAGGCG
Seq A exon
GCACGAGACCGCATCAAAAATGGTCTAACTAAATTGCTGGAGACAAATGAGCTGGTTGATAAGATGAAGCAAGACCTCTCGGCTCTGGAGCCAGTGCTTGCGCAGAAATCAATCGATGTCAGTGCTCTTATGGAGAAACTTGCCGTGGACCAAGAAAACGCGGATCAG
Seq C2 exon
GTGCGTAGGGTTGTGAAAGAGGATGAAGCTTTGGCTAAGGTAAAGGCAGAAGAGACTCAAGCCATTGCAGATGATGCACAGCGTGACTTGGATGAGGCTCTGCCTGCACTCGACAGCGCCAATAAGGCCCTCAATGCCCTTGACAAAGCTGACATTTCAGAAATGCGCGTCTTTACCAAACCACCAGACCTCGTGATGACTGTGATGGAAGCTGTGTGCATCCTGCTCAGCAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606-'52-55,'52-54,54-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PD(26.3=87.7)
A:
PF127772=MT=PU(15.8=94.6)
C2:
PF127772=MT=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTTGGCAGTGAGGAGA
R:
TGGCTTGAGTCTCTTCTGCCT
Band lengths:
258-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]