MmuEX6004948 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73076570-73084886:-
Coord C1 exon
chr6:73084651-73084886
Coord A exon
chr6:73082888-73083149
Coord C2 exon
chr6:73076570-73076693
Length
262 bp
Sequences
Splice sites
3' ss Seq
CACCATGGTCTGTCTTGCAGGCC
3' ss Score
9.81
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTCCGTAATGTTGTGCAAGAAGATGAAGCAATAGCAAAGGTGAAAGCTGAAGAGACTCAAGCGATCGCTGATGATGCCCAGAGAGACCTGGAGGAGGCACTCCCCGCCCTCGAAGCTGCCAATAAAGCACTGGATTCCTTAGACAAAGCAGATATCTCTGAAATCAGAGTCTTCACAAAGCCCCCCGACTTGGTCATGACTGTGATGGAAGCCATCTCCATCCTCTTAAATGCCAA
Seq A exon
GCCCGACTGGCCAACAGCAAAGCAACTTCTTGGTGACTCTAACTTCCTAAGAAGGCTTTTAGAATACGATAAGGAGAACATAAAGCCGCAGATCCTGTTGAAGCTTCAGAAGTACATCAACAATCCTGACTTCGTGCCTGAGAAGGTGGAGAAGGTGTCCAAGGCCTGCAAATCCATGTGCATGTGGGTGAGAGCCATGGATCTGTACTCTCGGGTGGTCAAGGAAGTTGAACCAAAGAGACAGAAGCTCCGTGCTGCCCAG
Seq C2 exon
GCTGAACTTGACGCTACAATGGCTACCCTGAAAGAAAAGCAAGCATTGCTGAAGCAAGTGGAAGATCAAATAAAGACTTTGCAAGACAAGTACGAGAAAGGAGTGAATGAGAAAGAAAGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'60-59,'60-57,62-59
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(23.3=100)
A:
PF127772=MT=FE(26.0=100)
C2:
PF127772=MT=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGACTCAAGCGATCGC
R:
ACTCCTTTCTCGTACTTGTCTTGC
Band lengths:
293-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types