RnoEX0028555 @ rn6
Exon Skipping
Gene
ENSRNOG00000015581 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:RGD Symbol;Acc:621797]
Coordinates
chr4:101007937-101014166:-
Coord C1 exon
chr4:101013931-101014166
Coord A exon
chr4:101012229-101012490
Coord C2 exon
chr4:101007937-101008060
Length
262 bp
Sequences
Splice sites
3' ss Seq
CACTGTGGTCTGTCTTTCAGGCC
3' ss Score
10.69
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTCCGTAATGTTGTGCAAGAAGATGAAGCAATAGCAAAGGTGAAAGCTGAAGAGACTCAAGCGATTGCTGATGATGCCCAGAGAGACCTGGAAGAGGCACTCCCTGCCCTTGAGGCTGCCAATAAAGCACTGGATTCCTTAGACAAAGCAGATATCTCTGAAATCCGAGTCTTCACAAAGCCCCCTGACTTGGTCATGACTGTGATGGAAGCCATCTCCATCCTCTTAAATGCCAA
Seq A exon
GCCGGACTGGCCAACAGCAAAGCAACTTCTTGGTGACTCTAACTTTCTAAGAAGGCTTTTAGAATATGATAAGGAAAACATAAAACCTCAGATTCTGTCAAAGCTTCAAAGGTACATCAACAACCCTGACTTCGTGCCTGAAAAGGTGGAAAAGGTGTCCAAGGCCTGTAAATCCATGTGCATGTGGGTGAGAGCCATGGATCTGTACTCTCGGGTGGTCAAGGAAGTCGAACCAAAGAGACAGAAACTCCGTGCTGCCCAG
Seq C2 exon
GCTGAACTTGATGCTACAATAACTACTCTGAAAGAAAAGCAGGCATTGCTGAAGCAAGTGGAAGAGCAAATAAGGGCTTTGCAAGAGGAGTACGACAAAGGCGTGAATGAGAAAGAAAGTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015581-'53-56,'53-55,54-56
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(23.3=100)
A:
PF127772=MT=FE(26.0=100)
C2:
PF127772=MT=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGAAGAGACTCAAGCGA
R:
CACGCCTTTGTCGTACTCCTC
Band lengths:
298-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]