MmuEX6006483 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118540451-118548375:-
Coord C1 exon
chr6:118548314-118548375
Coord A exon
chr6:118542890-118542983
Coord C2 exon
chr6:118540451-118540549
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTGATCTCTGCTCCAACAGAGT
3' ss Score
7.17
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAATGATGTCTGCATTAGGATTAGGAGAAGACGAAGATGAACACTCGCCTTGGGATTCTGAG
Seq A exon
AGTATCTCCGAGAGTGTGTCACTGAAAGACGTAGGTCACTTCTCTGGGACTGCAGATCAAACGGGAAAAAGGAGAGCACATGGACAGATAGAAG
Seq C2 exon
ATGTGACTTATATACCTTCTTGCATGAGTGGATCAAGAAGCTTTAAAATGGCTAAACTAGAGGAGTCAAGAAATGTAGGCCTTCCGGTAGCCCACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'12-17,'12-15,14-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGTCTGCATTAGGATTAGGAGA
R:
CCATGTGGGCTACCGGAAG
Band lengths:
159-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types