RnoEX6014795 @ rn6
Exon Skipping
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150590292-150596841:-
Coord C1 exon
chr4:150596780-150596841
Coord A exon
chr4:150594441-150594534
Coord C2 exon
chr4:150590292-150590390
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTTGATATCTGCTCCAACAGAGT
3' ss Score
6.04
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAATGATGTCTGCGTTGGGATTGGGAGAAGACGAAGATGAAGACTCACCTTGGGATTCTGAG
Seq A exon
AGTCTCTCCGAGAGTGTGTCACTGGACGGCGTAGCTCCCCTGTCTGGGACTGAAGATCACACAGGAAAAAGGAGAGCGCGCGGACAGATAGAAG
Seq C2 exon
ATGTGACTTATATACCTTCCTGCATGAGCGGATCAAGAAGCTTTAAGATGGCTAAGCTAGAGGAGTCCAGAACTGTAGGCATTCCAGTAGCCCACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717-'16-16,'16-15,18-16=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.794
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGTCTGCGTTGGGATTGG
R:
CCATGTGGGCTACTGGAATGC
Band lengths:
159-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]