MmuEX6006756 @ mm9
Exon Skipping
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121609305-121610987:+
Coord C1 exon
chr6:121609305-121609431
Coord A exon
chr6:121609938-121610166
Coord C2 exon
chr6:121610861-121610987
Length
229 bp
Sequences
Splice sites
3' ss Seq
TTACATCACACCCCCTGCAGCTC
3' ss Score
7.4
5' ss Seq
CGGGTAGAG
5' ss Score
2.04
Exon sequences
Seq C1 exon
TACCAGCTGCATACCACCTTGTAAGCCAAGGCCACATGGATGCTTTTCTAGAGTCTTCAGAGTCTCCCACAGAGACTACACGAAGCTACTTCCCTGAGACGTGGATCTGGGACTTGGTGATCGTGGA
Seq A exon
CTCAACAGGAGTGGCTGAAATGGAAGTGACAGTCCCTGACACCATCACTGAATGGAAGGCTGGGGCCTTCTGCCTGTCCAATGACACTGGGTTGGGCCTCTCTCCTGTGATCGATTTCCAAGCCTTCCAGCCCTTCTTCGTGGATCTCACAATGCCCTACTCCGTGATCCGTGGAGAGGCCTTCACGCTCAAGGCCACTGTGCTGAACTACCTCCAGACATGCATCCGG
Seq C2 exon
GTTGGTGTACAGCTGGAGGCCTCTCCTGATTTCCTAGCTACCCCAGAGGAGAAGGAACAAAAGTCTCACTGCATCTGTATGAACGAGCGGCATACCATGTCCTGGGCGGTGATCCCCAAGTCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-'18-20,'18-19,19-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF0020717=A2M=PU(9.9=20.9)
A:
PF0020717=A2M=FE(83.5=100)
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCTGCATACCACCTTG
R:
AATGACTTGGGGATCACCGCC
Band lengths:
252-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: