MmuEX6007268 @ mm9
Exon Skipping
Gene
ENSMUSG00000030359 | Pzp
Description
pregnancy zone protein [Source:MGI Symbol;Acc:MGI:87854]
Coordinates
chr6:128463754-128466948:-
Coord C1 exon
chr6:128466834-128466948
Coord A exon
chr6:128466091-128466200
Coord C2 exon
chr6:128463754-128463915
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTTCAGGAA
3' ss Score
12.57
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAGATGATAAAGGATGTTTCAGACAAGTTGTAAAAACCAAAGTATTCCAGCTCAGACAAAAAGGCCACGACATGAAGATAGAGGTGGAAGCCAAAATCAAAGAGGAAGGAACAG
Seq A exon
GAATAGAACTAACTGGTATTGGATCATGTGAAATAGCAAATGCCTTAAGCAAACTGAAATTTACTAAAGTAAATACAAATTACAGGCCTGGGCTACCTTTCTCTGGACAG
Seq C2 exon
GTTCTTCTTGTTGATGAGAAGGGTAAACCAATCCCCAACAAAAACATAACTTCCGTCGTGTCTCCACTTGGGTACCTGTCCATTTTTACTACGGATGAGCATGGCTTGGCTAACATTTCCATTGACACTTCCAACTTCACAGCTCCGTTTTTGAGAGTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030359-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAAAGTATTCCAGCTCAGACA
R:
CACAACTCTCAAAAACGGAGCTG
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: