BtaEX6024085 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MI18]
Coordinates
chr5:101226979-101230618:+
Coord C1 exon
chr5:101226979-101227093
Coord A exon
chr5:101229657-101229766
Coord C2 exon
chr5:101230457-101230618
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGAATTATTCTTCAGGGT
3' ss Score
8.63
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCAGATGATGAAGGTTGTTTCACACAACTAGTAAATGCTAAATCACTTCAGCTGAAACAAAAAGGATATGAGAGGACATTACAAGTGGAAGCCAAGGTCAGAGAGGAGGGAACAG
Seq A exon
GGTTGGAATTAACCGGACATGGATCAAGTGAAATCACAAACACCTTAAGCAAACTGAAATTTACGAAAGTGCATTCACATTACAGACGTGGGCTTCCTTTCTTTGGGCAG
Seq C2 exon
GTTCTTCTAGTCAATGAGAAGGATCAGCCAATCCCCAATGAGACTGTAGTGGTCAATGTGGATATGTTTCAGTATAGTGCCAGATTTACTACAAATGAGCACGGTTTGGTGAACTTTTCCATTGATACCAGTAACTTCACATCTTCTTTCATTTCAGTTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038461-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGATGAAGGTTGTTTCACA
R:
ACTGGTATCAATGGAAAAGTTCACCA
Band lengths:
247-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]