GgaEX6003274 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75733796-75735578:-
Coord C1 exon
chr1:75735464-75735578
Coord A exon
chr1:75735219-75735328
Coord C2 exon
chr1:75733796-75733957
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTACTGTGCTCTTTCTCAGGAA
3' ss Score
10.12
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCAGATGCTCATGGGTGTGTTTCTGCTGTGGTAAGGACCAAAATATTTCAGCTCCGGCGCAGGGGATATGAGATGAGCATTGAGGTGAAAGGCAAGATCACAGAAGATGGTACAG
Seq A exon
GAATAGTTGTGACTGGAATAGGCTCCTGTGAAATCACATCCATCATGAGCAAAGTCAGCTTTGACCTGTTGGACTCTCATTACAGACCAGGGATCCCACTCTTTGGGAGG
Seq C2 exon
GTAAAGCTGGTAGATGGTAATGATGCTCCCATTGCCAATGAAACCATCAGGATTTCTGTGAATGGAGACACGTACAAAGGCAATTACACTACAGATGAACAGGGACAATCCTGGTTTTCCATCAATACTACCATGTTCACAGAAGCCTCCCTGGAAATCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926-'12-10,'12-9,13-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGTGTGTTTCTGCTGTGG
R:
GGGAGGCTTCTGTGAACATGG
Band lengths:
256-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]