GgaEX6003274 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:79374991-79376773:-
Coord C1 exon
chr1:79376659-79376773
Coord A exon
chr1:79376414-79376523
Coord C2 exon
chr1:79374991-79375152
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTACTGTGCTCTTTCTCAGGAA
3' ss Score
10.12
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GCAGATGCTCATGGGTGTGTTTCTGCTGTGGTAAGGACCAAAATATTTCAGCTCCGGCGCAGGGGATATGAGATGAGCATTGAGGTGAAAGGCAAGATCACAGAAGATGGTACAG
Seq A exon
GAATAGTTGTGACTGGAATAGGCTCCTGTGAAATCACATCCATCATGAGCAAAGTCAGCTTTGACCTGTTGGACTCTCATTACAGACCAGGGATCCCACTCTTTGGGAGG
Seq C2 exon
GTAAAGCTGGTAGATGGTAATGATGCTCCCATTGCCAATGAAACCATCAGGATTTCTGTGAATGGAGACACGTACAAAGGCAATTACACTACAGATGAACAGGGACAATCCTGGTTTTCCATCAATACTACCATGTTCACAGAAGCCTCCCTGGAAATCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGTGTGTTTCTGCTGTGG
R:
GGGAGGCTTCTGTGAACATGG
Band lengths:
256-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]