RnoEX0071868 @ rn6
Exon Skipping
Gene
ENSRNOG00000006709 | Pzp
Description
pregnancy-zone protein [Source:RGD Symbol;Acc:628643]
Coordinates
chr4:161836202-161839347:-
Coord C1 exon
chr4:161839233-161839347
Coord A exon
chr4:161838584-161838687
Coord C2 exon
chr4:161836202-161836363
Length
104 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTTCAGGAATAGAAC
3' ss Score
-0.23
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAGATGAAAAAGGATGTTTCAGACAAGTTGTAAAAACCAAAGTGTTCCAGCCCAGACAGAAAGGCTATGACATGAAGATAGAGGTGGAAGCCAAGATCAAAGAGGACGGAACAG
Seq A exon
AACTAACTGGTACTGGATCATGTGAAATCGCAAATACCTTAAGCAAACTGAAATTTACTAAAGCGAATACATTTTACAGGCCTGGGCTGCCTTTCTTTGGACAG
Seq C2 exon
GTTCTTCTTGTTGATGAGAAGGGTCAACCAATCCCCAACAAAAATCTAACTGTCCAAGTGAATTCAGTTAGGTCCCAGTTCACTTTTACTACCGATGAGCATGGCTTGGCCAACATTCTCATCGACACCACCAACTTCACGTTTTCGTTTATGGGAATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006709-'11-13,'11-12,12-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAAAGTGTTCCAGCCCAG
R:
CCTGATTCCCATAAACGAAAACGTG
Band lengths:
242-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]