BtaEX6024119 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101309603-101312312:+
Coord C1 exon
chr5:101309603-101309717
Coord A exon
chr5:101309858-101309967
Coord C2 exon
chr5:101312151-101312312
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTCCTTCTTTTTCAGAGG
3' ss Score
11.26
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
Exon sequences
Seq C1 exon
CTGAACAATGAGGGCTGCTTCTCTCAGCAAGTAAACACCAAGATCTTCCAGTTGAAGAGACAAGAGTTTGAAATGAAAATCGAAGTGGAAGCCAAGATCCAAGAAGAAGGAACAG
Seq A exon
AGGTGGAATTAACTGGAAAGGGGGCCACTGAAATAACAACAACCATCACCAAACTCTCATTTGTCACAGTGGACTCAAACCTTAGACGAGGAATTCCTTTCACGGGGAAG
Seq C2 exon
GTGCTCCTAGTGGACGGGAAAGGTGTCCCCATGCCAAATAAAGTCATCTTCATCACAGCAAATGAAGCCAACCACAACTCTAACACCACCACTGATGAGCACGGCCTGGCACAGTTCTCCATCACCACCACCAAAATCAAGGGCACCTCCCTCAGTATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'8-10,'8-8,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=0.189 C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
PF0236911=Big_1=PU(34.0=86.5)
C2:
PF0236911=Big_1=FE(56.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGAGGGCTGCTTCTCTCA
R:
TGGTGGTGGTGATGGAGAACT
Band lengths:
243-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]